Selective Nanopore Sequencing with High-Speed GPU DTW

EasyChair Preprint 10915

Abstract

Nanopore sequencing has been a game-changer in genomics due to its real-time, long-read capabilities. One of the most promising applications of nanopore sequencing is selective sequencing, where specific regions of interest are targeted for analysis. However, the computational demands of selective sequencing, particularly in real-time, have presented significant challenges. In this article, we explore the use of high-speed Dynamic Time Warping (DTW) on Graphics Processing Units (GPUs) to enable selective nanopore sequencing with unprecedented efficiency and accuracy.

Keyphrases: CPU, GPU, abc

@booklet{EasyChair:10915,
  author    = {Lee Kasowaki},
  title     = {Selective Nanopore Sequencing with High-Speed GPU DTW},
  howpublished = {EasyChair Preprint 10915},
  year      = {EasyChair, 2023}}