| A |
| ADMET properties | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| Age-related research | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| agent-based | Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| Aging | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| Analysis of high-throughput biological data | Ranking Variable Combinations to Characterize Breast Cancer Subtypes using the IBIF-RF Metric |
| antimicrobial peptide recognition | Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition |
| Autism | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| B |
| Biclustering | Mining approximate frequent dense modules from multiple gene expression datasets |
| bifurcation analysis | Bifurcation Analysis of a Mathematical Model of Tumor Growth in MCF-7 Breast Cancer Cell Line |
| Bioinformatics | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features
Bioinformatics analysis of hereditary disease gene set to identify key modulators of myocardial remodeling during heart regeneration in zebrafish |
| Biological Data Clustering | Clique Selection and its Effect on Paraclique Enrichment: An Experimental Study |
| Biomarker ALT release on Drug-Induced-Liver-Injury | Virtual Experimentation Complements Real-World Experimentation |
| Biomimetic Software Analogs | Virtual Experimentation Complements Real-World Experimentation |
| Boolean modelling | Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model |
| breast cancer | Ranking Variable Combinations to Characterize Breast Cancer Subtypes using the IBIF-RF Metric
Bifurcation Analysis of a Mathematical Model of Tumor Growth in MCF-7 Breast Cancer Cell Line |
| C |
| C. elegans | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| CAI | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| cancer genomics | Ranking Variable Combinations to Characterize Breast Cancer Subtypes using the IBIF-RF Metric |
| cancer systems biology | Identification of Deregulated Transcription Factors Involved in Specific Bladder Cancer Subtypes |
| cellular exposure | Exposure Measurements on Biomimetic Lobules Using Virtual Experiments to Help Improve IVIVE
Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| circadian clocks | Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model |
| cluster analysis | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| co-expression network | Co-expression networks uncover regulation of splicing and transcription markers of disease |
| codon usage bias | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| computational biology | Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model
Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| Convolution Layer | Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition |
| Convolutional Neural Network | Classification of functional Near Infra Red Signals with Machine Learning for Prediction of Epilepsy
Convolutional neural net learns promoter sequence features driving transcription strength |
| COX-2 enzyme | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| D |
| Data Mining | Ranking Variable Combinations to Characterize Breast Cancer Subtypes using the IBIF-RF Metric |
| deep learning | Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition |
| Deregulation | Identification of Deregulated Transcription Factors Involved in Specific Bladder Cancer Subtypes |
| drug resistance | Assessing Protein-Drug Resistance Due to Mutations via a Rigidity Analysis in silico Approach |
| Dynamic Time Warping | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| E |
| Electroencephalogram | Classification of functional Near Infra Red Signals with Machine Learning for Prediction of Epilepsy |
| Epileptic focus localization | Epileptic Focus Localization Based on iEEG Plot Images by Using Convolutional Neural Network |
| epileptic seizure prediction | Classification of functional Near Infra Red Signals with Machine Learning for Prediction of Epilepsy |
| Experiment Agent | Virtual Experimentation Complements Real-World Experimentation |
| F |
| feature fusion | Epileptic Focus Localization Based on iEEG Plot Images by Using Convolutional Neural Network |
| Frequent Dense Modules | Mining approximate frequent dense modules from multiple gene expression datasets |
| functional Near Infra-Red Spectroscopy | Classification of functional Near Infra Red Signals with Machine Learning for Prediction of Epilepsy |
| G |
| gene co-expression networks | Mining approximate frequent dense modules from multiple gene expression datasets |
| gene expression | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| gene regulatory networks | Identification of Deregulated Transcription Factors Involved in Specific Bladder Cancer Subtypes
Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model |
| GeneLab | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| genotype | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| GPU | Graphical Processing Unit - Supported RNA Secondary Structure Comparison |
| Graph Theoretical Algorithms | Clique Selection and its Effect on Paraclique Enrichment: An Experimental Study |
| graphical lasso | Co-expression networks uncover regulation of splicing and transcription markers of disease |
| H |
| Healthspan | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| heart regeneration | Bioinformatics analysis of hereditary disease gene set to identify key modulators of myocardial remodeling during heart regeneration in zebrafish |
| hepatic clearance | Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| I |
| iEEG | Epileptic Focus Localization Based on iEEG Plot Images by Using Convolutional Neural Network |
| in silico | Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| in vitro selection | ASPECT, an LDA-Based Predictive Algorithm for In Vitro Selection |
| in vitro-in vivo extrapolation | Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| L |
| LDA | ASPECT, an LDA-Based Predictive Algorithm for In Vitro Selection |
| lifespan | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| Liver Disease | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| M |
| machine learning | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| Magnetic Resonance Image | Predicting Microvascular Invasion of Hepatocellular Carcinoma by texture analysis of multi-phase MR image |
| MCF-7 | Bifurcation Analysis of a Mathematical Model of Tumor Growth in MCF-7 Breast Cancer Cell Line |
| MD simulation | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| Medical Informatics | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| Microvascular Invasion | Predicting Microvascular Invasion of Hepatocellular Carcinoma by texture analysis of multi-phase MR image |
| Model Mechanisms | Virtual Experimentation Complements Real-World Experimentation |
| modeling | Exposure Measurements on Biomimetic Lobules Using Virtual Experiments to Help Improve IVIVE |
| mRNA abundance | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| multi-instance learning | From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures |
| multi-objective optimisation | Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model |
| multi-phase features | Predicting Microvascular Invasion of Hepatocellular Carcinoma by texture analysis of multi-phase MR image |
| Mutaion Bias | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| N |
| NASA | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| nature-inspired computation | Multi-objective Optimisation of Gene Regulatory Networks: Insights from a Boolean Circadian Clock Model |
| nematode | Measurement of similarity in C. elegans healthspan using dynamic time warping on movement features |
| neural network | Convolutional neural net learns promoter sequence features driving transcription strength |
| numerical method | Bifurcation Analysis of a Mathematical Model of Tumor Growth in MCF-7 Breast Cancer Cell Line |
| numerical simulation | Bifurcation Analysis of a Mathematical Model of Tumor Growth in MCF-7 Breast Cancer Cell Line |
| O |
| omics | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| Ontological Enrichment | Clique Selection and its Effect on Paraclique Enrichment: An Experimental Study |
| P |
| parallel programming | Graphical Processing Unit - Supported RNA Secondary Structure Comparison |
| pharmacokinetics | Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| phenotype | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| PhGC | PhGC: A Machine Learning Based Workflow for Phenotype-Genotype Co-analysis on Autism |
| Prime MMGBSA | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| promoter | Convolutional neural net learns promoter sequence features driving transcription strength |
| protein structure prediction | From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures |
| protein tertiary structure | From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures |
| Protein Translation Rate | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| Protein-ligand complex | Assessing Protein-Drug Resistance Due to Mutations via a Rigidity Analysis in silico Approach |
| R |
| Ramachandran plot | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| recurrent layer | Exploring Deep Neural Network Architectures: A Case Study on Improving Antimicrobial Peptide Recognition |
| rigidity analysis | Assessing Protein-Drug Resistance Due to Mutations via a Rigidity Analysis in silico Approach |
| RNA | Graphical Processing Unit - Supported RNA Secondary Structure Comparison |
| RNA secondary structure | Graphical Processing Unit - Supported RNA Secondary Structure Comparison |
| RNA sequencing | Co-expression networks uncover regulation of splicing and transcription markers of disease |
| S |
| selection | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| sequence model | Convolutional neural net learns promoter sequence features driving transcription strength |
| simulation | Exposure Measurements on Biomimetic Lobules Using Virtual Experiments to Help Improve IVIVE
Hepatocyte Organization Affects the Translation of Clearance from In Vitro to In Vivo |
| spaceflight | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| Support Vector Machine | Classification of functional Near Infra Red Signals with Machine Learning for Prediction of Epilepsy |
| synthetic biology | Convolutional neural net learns promoter sequence features driving transcription strength |
| systems biology | Ranking Variable Combinations to Characterize Breast Cancer Subtypes using the IBIF-RF Metric |
| T |
| Tai | Analysis of Mutation Bias in Shaping Codon Usage Bias and Its Association with Gene Expression Across Species |
| texture features | Predicting Microvascular Invasion of Hepatocellular Carcinoma by texture analysis of multi-phase MR image |
| The Paraclique Algorithm | Clique Selection and its Effect on Paraclique Enrichment: An Experimental Study |
| topic modeling | ASPECT, an LDA-Based Predictive Algorithm for In Vitro Selection |
| transcript-level | Co-expression networks uncover regulation of splicing and transcription markers of disease |
| transcription rate | Convolutional neural net learns promoter sequence features driving transcription strength |
| Transcriptomic Data Analysis | Clique Selection and its Effect on Paraclique Enrichment: An Experimental Study |
| treatment-specific network | Co-expression networks uncover regulation of splicing and transcription markers of disease |
| U |
| unsupervised learning | From Unsupervised Multi-Instance Learning to Identification of Near-Native Protein Structures |
| V |
| virtual experimentation | Virtual Experimentation Complements Real-World Experimentation |
| Virtual Liver | Exposure Measurements on Biomimetic Lobules Using Virtual Experiments to Help Improve IVIVE |
| virtual screening | In silico library design, screening and MD simulation of COX-2 inhibitors for anticancer activity |
| visualization | Visualizing Omics Data from Spaceflight Samples using the NASA GeneLab Platform |
| Z |
| zebrafish | Bioinformatics analysis of hereditary disease gene set to identify key modulators of myocardial remodeling during heart regeneration in zebrafish |
